Index

_

__init__() (emodlib.malaria.Infection method) (emodlib.malaria.IntrahostComponent method) (emodlib.malaria.MalariaConfig method) (emodlib.malaria.Susceptibility method)

A

age (emodlib.malaria.Susceptibility property) antibody_capacity_growthrate (emodlib.malaria.MalariaConfig property) antibody_csp_decay_days (emodlib.malaria.MalariaConfig property)

antibody_IRBC_killrate (emodlib.malaria.MalariaConfig property) antibody_stimulation_c50 (emodlib.malaria.MalariaConfig property) antigen_switch_rate (emodlib.malaria.MalariaConfig property)

B

base_gametocyte_mosquito_survival (emodlib.malaria.MalariaConfig property)

base_gametocyte_production (emodlib.malaria.MalariaConfig property) base_gametocyte_sexratio (emodlib.malaria.MalariaConfig property)

C

challenge() (emodlib.malaria.IntrahostComponent method) configure() (emodlib.malaria.MalariaConfig method) create() (emodlib.malaria.Infection static method) (emodlib.malaria.IntrahostComponent static method) (emodlib.malaria.Susceptibility static method)

create_config() (in module emodlib.malaria) cytokine_gametocyte_inactivation (emodlib.malaria.MalariaConfig property)

D

default_params (emodlib.malaria.IntrahostComponent attribute)

E

emodlib module

emodlib.malaria module erythropoiesis_anemia_effect (emodlib.malaria.MalariaConfig property)

F

falciparum_MSP_variants (emodlib.malaria.MalariaConfig property) falciparum_nonspecific_types (emodlib.malaria.MalariaConfig property) falciparum_PfEMP1_variants (emodlib.malaria.MalariaConfig property) fever_IRBC_killrate (emodlib.malaria.MalariaConfig property)

fever_kill_rate (emodlib.malaria.Susceptibility property) fever_temperature (emodlib.malaria.IntrahostComponent property) from_params() (emodlib.malaria.MalariaConfig static method) from_yaml() (emodlib.Params class method)

G

gametocyte_density (emodlib.malaria.IntrahostComponent property)

gametocyte_stage_survival (emodlib.malaria.MalariaConfig property)

H

hyperimmune_decay_rate (emodlib.malaria.MalariaConfig property)

I

incubation_period (emodlib.malaria.MalariaConfig property) Infection (class in emodlib.malaria)

infections (emodlib.malaria.IntrahostComponent property) infectiousness (emodlib.malaria.IntrahostComponent property) IntrahostComponent (class in emodlib.malaria)

M

MalariaConfig (class in emodlib.malaria) maternal_antibody_decay_rate (emodlib.malaria.MalariaConfig property) maternal_antibody_strength (emodlib.malaria.Susceptibility property) max_ind_inf (emodlib.malaria.MalariaConfig property) memory_level (emodlib.malaria.MalariaConfig property) merozoites_per_hepatocyte (emodlib.malaria.MalariaConfig property) merozoites_per_schizont (emodlib.malaria.MalariaConfig property)

minimum_adapted_response (emodlib.malaria.MalariaConfig property) module emodlib emodlib.malaria MSP1_antibody_growthrate (emodlib.malaria.MalariaConfig property) MSP1_merozoite_kill (emodlib.malaria.MalariaConfig property) msp_antibody (emodlib.malaria.Infection property) msp_type (emodlib.malaria.Infection property)

N

n_asexual_cycles_wo_gametocytes (emodlib.malaria.MalariaConfig property) n_infections (emodlib.malaria.IntrahostComponent property)

non_specific_antigenicity (emodlib.malaria.MalariaConfig property) non_specific_growth (emodlib.malaria.MalariaConfig property)

P

Params (class in emodlib) parasite_density (emodlib.malaria.IntrahostComponent property)

pfemp1_major_types (emodlib.malaria.Infection property) pyrogenic_threshold (emodlib.malaria.MalariaConfig property) (emodlib.malaria.Susceptibility property)

R

random_seed (emodlib.malaria.MalariaConfig property)

RBC_destruction_multiplier (emodlib.malaria.MalariaConfig property)

S

Susceptibility (class in emodlib.malaria)

susceptibility (emodlib.malaria.IntrahostComponent property)

T

treat() (emodlib.malaria.IntrahostComponent method)

U

update() (emodlib.malaria.Infection method) (emodlib.malaria.IntrahostComponent method) (emodlib.malaria.MalariaConfig method) (emodlib.malaria.Susceptibility method)

Y

yaml (emodlib.malaria.MalariaConfig property) (emodlib.Params property)